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Publications

Journal Papers – 2017

  • Maes, T., Jessop, R., Wellner, N., Haupt, K., Mayes, A. G. (2017) A rapid-screening approach to detect and quantify microplastics based on fluorescent tagging with Nile Red, Sci Rep 7, 44501. doi:10.1038/srep44501
  • Man, A. L., Gicheva, N., Regoli, M., Rowley, G., De Cunto, G., Wellner, N., Bassity, E., Gulisano, M., Bertelli, E., Nicoletti, C. (2017) CX(3)CR1(+) Cell-Mediated Salmonella Exclusion Protects the Intestinal Mucosa during the Initial Stage of Infection, J. Immunol. 198, 335-343. doi:10.4049/jimmunol.1502559

Journal Papers – 2016

  • Gunning Y., Watson A. D., Rigby N. M., Philo M., Peazer K., Kemsley E. K. (2016) Species determination and quantification in mixtures using MRM mass spectrometry of peptides applied to meat authentication Journal of Visualized Experiments 115 e54420 doi:10.3791/54420 (2016)
  • Defernez M., Wren E., Watson A. D., Gunning Y., Colquhoun I. J., Le Gall G., Williamson D., Kemsley E. K.(2016) Low-field 1H NMR spectroscopy for distinguishing between arabica and robusta ground roast coffees Food Chemistry 216 106-113 doi:10.1016/j.foodchem.2016.08.028
  • Pereira, P. H. F., Oliveira, T. I. S., Rosa, M. F., Cavalcante, F. L., Moates, G. K., Wellner, N., Waldron, K. W., and Azeredo, H. M. C. (2016) Pectin extraction from pomegranate peels with citric acid, International Journal of Biological Macromolecules 88, 373-379.
  • Oliveira, T. Í. S., Zea-Redondo, L., Moates, G. K., Wellner, N., Cross, K., Waldron, K. W., and Azeredo, H. M. C. (2016) Pomegranate peel pectin films as affected by montmorillonite, Food Chemistry 198, 107-112.
  • Oliveira, T. Í. S., Rosa, M. F., Cavalcante, F. L., Pereira, P. H. F., Moates, G. K., Wellner, N., Mazzetto, S. E., Waldron, K. W., and Azeredo, H. M. C. (2016) Optimization of pectin extraction from banana peels with citric acid by using response surface methodology, Food Chemistry 198, 113-118.
  • Azeredo, H. M. C., Morrugares-Carmona, R., Wellner, N., Cross, K., Bajka, B., and Waldron, K. W. (2016) Development of pectin films with pomegranate juice and citric acid, Food Chemistry 198, 101-106.

Journal Papers – 2015

  • Weight, C. M., Jones, E. J., Horn, N., Wellner, N., Carding, S. R. (2015)
    Elucidating pathways of Toxoplasma gondii invasion in the gastrointestinal tract: involvement of the tight junction protein occludin Microbes and Infection 17, 698-709.
  • Alhijjaj, M., Bouman, J., Wellner, N., Belton, P., and Qi, S. (2015) Creating Drug Solubilization Compartments via Phase Separation in Multicomponent Buccal Patches Prepared by Direct Hot Melt Extrusion-Injection Molding, Molecular Pharmaceutics 12, 4349-4362.
  • OPEN ACCESS Watson A. D., Gunning Y., Rigby N. M., Philo M., Kemsley E. K.(2015) Rapid Meat Authentication via MRM Mass Spectrometry of Myoglobin Peptides Analytical Chemistry doi: 10.1021/acs.analchem.5b02318
  • OPEN ACCESS Wood, I. P., Wellner, N., Elliston, A., Wilson, D. R., Bancroft, I., Waldron, K. W. (2015) Effect of Brassica napus cultivar on cellulosic ethanol yield Biotechnology for Biofuels 8, 11.
  • OPEN ACCESS Jakes W., Gerdova A., Defernez M., Watson A., McCallum C., Limer W., Colquhoun I. J., Williamson D., Kemsley E. K. (2015) Authentication of beef versus horse meat using 60 MHz 1H NMR spectroscopy Food Chemistry 175, 1-9 doi:10.1016/j.foodchem.2014.11.110
  • Azeredo, H. M. C., Kontou-Vrettou, C., Moates, G. K., Wellner, N., Cross, K., Pereira, P. H. F., Waldron, K. W. (2015) Wheat straw hemicellulose films as affected by citric acid, Food Hydrocolloids 50, 1-6.
  • Elliston, A., Wilson, D. R., Wellner, N., Collins, S. R. A., Roberts, I. N., Waldron, K. W. (2015) Effect of steam explosion on waste copier paper alone and in a mixed lignocellulosic substrate on saccharification and fermentation Bioresource Technology 187, 136-143.
  • Liu D., Wellner N., Parker M. L., Morris V. J., Cheng F. (2015). In situ mapping of the effect of additional mutations on starch granule structure in amylose-extender (ae) maize kernels Carbohydrate Polymers 118 199-208.
  • Salmon M., Laurendon C., Vardakou M., Cheema J., Defernez M., Green S., Faraldos J. A., O’Maille P. E.(2015) Emergence of terpene cyclization in Artemisia annua Nature Communications 6 6143.

Journal Papers – 2014

  • OPEN ACCESS Parker T., Limer E., Watson A., Defernez M., Williamson D., Kemsley E. K.(2014) 60MHz 1H NMR Spectroscopy for the analysis of edible oils TRAC – Trends in Analytical Chemistry 57, 147–158 doi.org/10.1016/j.trac.2014.02.006
  • OPEN ACCESS Martin J. C., Maillot M., Mazerolles G., Verdu A., Lyan B., Migné C., …, Shintu L., Defernez M., Philo M., Alexandre-Gouaubau M. C., Amiot-Carlin M. J., Bossis M., Triba M., Stojilkovic N., Banzet N., Molinié R., Bott R., Goulitquer S., Caldarelli S., Rutledge D. N.(2014) Can we trust untargeted metabolomics? Results of the Metabo-Ring initiative, a large-scale, multi-instrument inter-laboratory study Metabolomics 10 6 doi 10.1007/s11306-014-0740-0
  • Cretenet M., Le Gall G., Wegmann U., Even S., Shearman C., Stentz R. Jeanson S. (2014) Early adaptation to oxygen is key to the industrially important traits of Lactococcus lactis ssp. cremoris during milk fermentation. BMC Genomics 15 1054
  • Ribeiro M. A., Cominetti C., Kakazu M. H., Sarkis J. E. S., Dainty J. R., Fox T. E., Cozzolino S. M. F.(2014) Zinc absorption in Brazilian subjects fed a healthy meal Journal of Human Nutrition and Dietetics 27(2) 313-320
  • Patanwala I., King M. J., Barrett D. A., Rose J., Jackson R., Hudson M., Philo M., Dainty J. R., Wright A. J. A., Finglas P. M., Jones D. E.(2014) Folic acid handling by the human gut: Implications for food fortification and supplementation American Journal of Clinical Nutrition 100 593-599
  • Dainty J. R., Berry R., Lynch S. R., Harvey L. J., Fairweather-Tait S. J.(2014) Estimation of dietary iron bioavailability from food iron intake and iron status. PLoS ONE 9 e111824
  • Wawer A. A., Harvey L. J., Dainty J. R., Perez-Moral N., Sharp P. A., Fairweather-Tait S. J.(2014) Alginate Inhibits Iron Absorption from Ferrous Gluconate in a Randomized Controlled Trial and Reduces Iron Uptake into Caco-2 Cells. PLoS ONE 9 e112144
  • Johnson P. E., Rigby N. M., Dainty J. R., Mackie A. R., Immer U. U., Rogers A., Titchner P., Shoji M., Ryan A., Mata L., Brown H., Holzhauser T., Dumont V., Wykes J. A., Walker M., Griffin J., White J., Taylor G., Popping B., Crevel R., Miguel S., Lutter P., Gaskin F., Koerner T. B., Clarke D., Sherlock R., Flanagan A., Chan C. H., Mills E. N. C.(2014) A multi-laboratory evaluation of a clinically-validated incurred quality control material for analysis of allergens in food. Food Chemistry 148 30-36
  • Gasper A., Hollands W., Casgrain A., Saha S., Teucher B., Dainty J.R, Venema D., Hollman P., Rein M., Nelson R., Williamson G., Kroon P. (2014) Consumption of both low and high (-)-epicatechin apple puree attenuates platelet reactivity and increases plasma concentrations of nitric oxide metabolites: A randomized controlled trial. Archives of Biochemistry and Biophysics 559 29-37
  • Zhao, X., Moates, G. K., Wellner, N., Collins, S. R. A., Coleman, M. J., and Waldron, K. W. (2014) Chemical characterisation and analysis of the cell wall polysaccharides of duckweed (Lemna minor), Carbohydrate Polymers 111, 410-418.
  • Collins, S. R. A., Wellner, N., Bordonado, I. M., Harper, A. L., Miller, C. N., Bancroft, I., and Waldron, K. W. (2014) Variation in the chemical composition of wheat straw: the role of tissue ratio and composition, Biotechnology for Biofuels 7, 14.
  • OPEN ACCESS Ryden P., Gautier A., Wellner N., Tapp H. S., Horn S. J., Eijsink V. G. H., Waldron K. W. (2014) Changes in the composition of the main polysaccharide groups of oil seed rape straw following steam explosion and saccharification Biomass and Bioenergy 61 121-130 doi.org/10.1016/j.biombioe.2013.12.003
  • Brown H., Reuter M., Salt L. J., Cross K. L., Betts R. P., van Vliet A. H. M.(2014) Chicken juice enhances surface attachment and biofilm formation of Campylobacter jejuni. Applied and Environmental Microbiology 80 7053-7060
  • Stentz R., Horn N., Cross K., Salt L., Brearley C., Livermore D. M., Carding S. R.(2014) Cephalosporinases associated with outer membrane vesicles released by Bacteroides spp. protect gut pathogens and commensals against β-lactam antibiotics Journal of Antimicrobial Chemotherapy 2015 doi:10.1093/jac/dku466

Journal Papers – 2013

  • Armah C. N., Traka M. H., Dainty J. R., Defernez M., Janseens A., Leung W., Doleman J. F., Potter J. F., Mithen R. F. (2013) A diet rich in high-glucoraphanin broccoli interacts with genotype to reduce discordance in plasma metabolic profiles by modulating mitochondrial function American Journal of Clinical Nutrition, 98 (3), 712-722. doi:10.3945/ajcn.113.065235
  • BOOK CHAPTER Defernez M., Le Gall G.(2013) Strategies for data-handling and statistical analysis in metabolomics studies Metabolomics coming of age with its technological diversity Elsevier 67 /1 493-555
  • Zhang, Y., Butelli, E., De Stefano, R., Schoonbeek, H. J., Magusin, A., Pagliarani, C., Wellner, N., Hill, L., Orzaez, D., Granell, A., Jones, J. D. G., and Martin, C. (2013) Anthocyanins Double the Shelf Life of Tomatoes by Delaying Overripening and Reducing Susceptibility to Gray Mold, Curr. Biol. 23, 1094-1100.
  • Toole, G. A., Selvatico, E., Salt, L. J., Le Gall, G., Colquhoun, I. J., Wellner, N., Shewry, P. R., and Mills, E. N. C. (2013) Effect of Dough Mixing on Wheat Endosperm Cell Walls, J. Agric. Food Chem. 61, 2522-2529.
  • Liu, D. L., Parker, M. L., Wellner, N., Kirby, A. R., Cross, K., Morris, V. J., and Cheng, F. (2013) Structural variability between starch granules in wild type and in ae high-amylose mutant maize kernels, Carbohydrate Polymers 97, 458-468
  • Elliott G. O., Johnson I. T., Scarll J., Dainty J., Williams E. A., Garg D., Coupe A., Bradburn D. M., Mathers J. C., Belshaw N. J.(2013) Quantitative profiling of CpG island methylation in human stool for colorectal cancer detection International Journal of Colorectal Disease 28 35-42
  • Dertli E., Colquhoun I., Gunning A. P., Bongaerts R. J., Le Gall G., Bonev B. B., Mayer M. J., Narbad A. (2013) Structure and biosynthesis of two novel exopolysaccharides produced byLactobacillus johnsonii J. Biol Chem.288 31938-31951
  • Crost E.H., Tailford, L. E., Le Gall G., Fons M., Henrissat, B., Juge N. (2013) Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent PLOS one8:e76341
  • Merali Z., Ho J. D., Collins S. R. A., Le Gall G., Elliston E., Kasper A., Waldron K. W. (2013) Characterization of cell wall components of wheat straw following hydrothermal pretreatment and fractionation Bioresource Technology 131 226-234
  • Alexandre-Gouabau M. C., Courant F., Moyon T., Küster A., Le Gall G., Tea I., Antignac J. P., Darmaun D. (2013) Maternal and cord blood LC-HRMS metabolomics reveal alterations in energy and polyamine metabolism, and oxidative stress in very-low-birth-weight infants J. Proteome Research 12 2764-2778 (2013)f a probiotic induced changes at the nasal mucosa of seasonal allergic rhinitis subjects after local allergen challenge PLoS ONE 8 doi:10.1186/2045-7022-2-5
  • Larner F., Sampson B., Rehkamper M., Weiss D. J., Dainty J. R., O’Riordan S., Panetta T., Bain P. G.(2013) High precision isotope measurements reveal poor control of copper metabolism in Parkinsonism Metallomics 5 125-132
  • Ivory K., Wilson A. M., Sankaran P., Westwood M., McCarville J., Brockwell C., Clark A., Dainty J. R., Zuidmeer-Jongejan L., Nicoletti C.(2013) Oral delivery of a probiotic induced changes at the nasal mucosa of seasonal allergic rhinitis subjects after local allergen challenge: a randomised clinical trial. PLoS One. 15;8(11)
  • Hollands W. J., Hart D. J., Dainty J. R., Hasselwander O., Tiihonen K., Wood R., Kroon P. A.(2013) Bioavailability of epicatechin and effects on nitric oxide metabolites of an apple flavanol-rich extract supplemented beverage compared to a whole apple puree: a randomized, placebo-controlled, crossover trial. Molecular Nutrition and Food Research 57(7):1209-17
  • Hussin, A. S. M., Collins, S. R. A., Merali, Z., Parker, M. L., Elliston, A., Wellner, N., and Waldron, K. W. (2013) Characterisation of lignocellulosic sugars from municipal solid waste residue, Biomass & Bioenergy 51, 17-25.
  • James S. A., Carvajal B E. J., Portero B P., Cross K., Bond C. J., Roberts I. N.(2013) Candida ecuadorensis sp. nov., a novel ascomycetous yeast species found in two separate regions of Ecuador International Journal of Systematic and Evolutionary Microbiology 63 393-397

Journal Papers – 2012

  • OPEN ACCESS Tapp HS, Commane DM, Bradburn DM, Arasaradnam R, Mathers JC, Johnson IT, Belshaw NJ (2012) Nutritional factors and gender influence age-related DNA methylation in the human rectal mucosa Aging Cell. doi: 10.1111/acel.12030
  • Vivekanand V, Ryden P, Horn SJ, Tapp HS, Wellner N, Eijsink VGH, Waldron KW (2012) Impact of steam explosion on biogas production from rape straw in relation to changes in chemical composition Bioresource Technology 123 608-615. doi: 10.1016/j.biortech.2012.06.088
  • Shaw F, Mulholland F, Le Gall G, Porcelli I, Hart D, Pearson B, van Vliet A. (2012) Selenium-dependent biogenesis of formate dehydrogenase in Campylobacter jejuni is controlled by the fdhTU accessory genes J. Bacteriology 194 3814-3823
  • Toole GA, Le Gall G, Colquhoun IJ, Drea S, Opanowicz, Bedö Z, , Shewry PR, Mills EN Spectroscopic Analysis of Diversity of Arabinoxylan Structures in Endosperm Cell Walls of Cereal  Species in the HEALTHGRAIN Diversity Collection. J.Cereal Sci. 56 134-141 (2012)
  • Tea I., Le Gall G., Kuster A., Guignard N., Alexandre-Gouabau M. C., Darmaun D., Robins R.(2012) 1H-NMR-based metabolic profiling of maternal and umbilical cord blood indicates altered materno-foetal nutrient exchange in preterm infants PLOS one 7 e29947
  • Méric G, Kemsley EK, Falush D, Saggers EJ, Lucchini S (2012) Phylogenetic distribution of traits associated with plant colonization in Escherichia coli Environmental Microbiology 15(2) 487-501 DOI: 10.1111/j.1462-2920.2012.02852.x. View abstract at PubMed
  • Shintu L., Baudoin R., Navratil V., Prot J. M., Pontoizeau C., Defernez M., Blaise B., Domange C., Pery A. R. R., Toulhoat P., Legallais C., Brochot C., Leclerc E., Dumas M. E.(2012) Metabolomics-on-a-chip and predictive systems toxicology in microfluidic bioartificial organs Analytical Chemistry 84 1840-1848
  • King M. J., Brima E. I., Dainty J. R., Barrett D. A., Wright A. J., Willis G., Finglas P. M.(2012) Estimation of the folate apparent volume of distribution in humans Journal of Nutrition 142 389-395
  • OPEN ACCESS Tapp H. S., Radonjic M., Kemsley E. K., Thissen U. (2012) Evaluation of multiple variate selection methods from a biological perspective: a nutrigenomics case study. Genes & Nutrition 7 (3) 387-397. E-print doi: 10.1007/s12263-012-0288-4 View and download
  • OPEN ACCESS BOOK CHAPTER Kemsley E. K., Defernez M. (2012) Relating surface electromyograms of the facial muscles during mastication to the mechanical and sensory properties of foodstuffs in Applications of EMG in Clinical and Sports Medicine Intech pp329 – 358 View & download at Intech
  • Van Buggenhout, S., Ahrne, L., Alminger, M., Andrys, A., Benjamin, M., Bialek, L., Cleaver, G., Colle, I., Langton, M., Larque, E., Lemmens, L., Lofgren, A., Lopez-Sanchez, P., Perez-Llamas, F., Martinez-Tomas, R., Robertson, J., Schalow, S., Svelander, C., Wellner, N., Hendrickx, M., and Waldron, K. (2012) Structural design of natural plant-based foods to promote nutritional quality, Trends Food Sci. Technol. 24, 47-59
  • Macierzanka, A., Boettger, F., Lansonneur, L., Groizard, R., Jean, A. S., Rigby, N. M., Cross, K., Wellner, N., and Mackie, A. R. (2012) The effect of gel structure on the kinetics of simulated gastrointestinal digestion of bovine beta-lactoglobulin, Food Chem. 134, 2156-2163.
  • Giosafatto, C. V. L., Rigby, N. M., Wellner, N., Ridout, M., Husband, F., and Mackie, A. R. (2012) Microbial transglutaminase-mediated modification of ovalbumin, Food Hydrocolloids 26, 261-267
  • Pitino I., Randazzo C. L., Cross K. L., Parker M. L., Faulks R. M., Caggia C., Wickham M. S. J., Mandalari G.(2012) Survival of Lactobacillus rhamnosus strains inoculated in cheese matrix during simulated human digestion Food Microbiology 31 57-63

Journal Papers – 2011

  • Le Gall G., Noor S., Ridgway K., Scovell L., Crawford J., Johnson I. T., Colquhoun I. J., Kemsley E. K., Narbad A.(2011) Metabolomics of faecal extracts detects altered metabolic activity of gut microbiota in ulcerative colitis and irritable bowel syndrome Journal of Proteome Research 10 4208-4218 E-print doi: 10.1021/pr2003598 View abstract at J Prot Res
  • Alexandre-Gouabau MC, Courant F, Le Gall G, Moyon T, Darmaun D, Parnet P, Coupé B, Antignac JP. (2011) Offspring Metabolomic Response to Maternal Protein Restriction in a Rat Model of Intrauterine Growth Restriction (IUGR) J. Proteome Res. 10:3292-3302
  • Rahmioglu N., Le Gall G., Heaton J., Kay K., Smith N., Colquhoun I. J., Ahmadi K., Kemsley E. K.(2011) Prediction of variability in CYP3A4 induction using a combined 1H NMR metabonomics and targeted UPLC/MS approach Journal of Proteome Research. 10 (6) 2807-2816. E-print doi: 10.1021/pr200077n View abstract at PubMed
  • Powers H. J., Hill M. H., Mushtaq S., Dainty J. R., Majsak-Newman G., Williams E. A.(2011) Correcting a marginal riboflavin deficiency improves haematological status in young women (RIBOFEM) American Journal of Clinical Nutrition 93 1274-1284 View abstract at PubMed
  • Johnson P. E., Aldick T., Giosafatto C. V. L., Watson A., Mills E. N. C., Baumgartner S., Bessant C., Heick J., Mamone G., O’Connor G., Poms R., Popping B., Reuter A., Ulberth F., Monaci L. (2011) Current Perspectives and Recommendations for the Development of Mass Spectrometry Methods for the Determination of Allergens in Foods Journal of AOAC International 94 1026-1033
  • Smit H., Kemsley E. K., Tapp H. S., Henry C. J. K.(2011) Does prolonged chewing reduce food intake? Fletcherism revisited. Appetite. 57 (1) 295-8. E-print doi:10.1016/j.appet.2011.02.003. View abstract at PubMed
  • Sancho A. I., Wangorsch A., Jensen J., Watson A. D., Alexeev Y., Johnson P. E., Reese G., Ballmer-Weber B., Hoffmann-Sommergruber K., Skov P., Vieths S., Mills E. N. C., Mackie A. R., Neubauer A.(2011) Responsiveness of the major birch allergen bet v 1 scaffold to the gastric environment: impact on structure and allergenic activity. Molecular Nutrition and Food Research 55 1690-1699
  • Johnson P. E., Philo M., Mills E. N. C., Watson A. D.(2011) Rapid fingerprinting of milk thermal processing history by intact mass spectrometry with non-denaturing chromatography Journal of Agricultural and Food Chemistry 59 12420-12427
  • Tapp H. S., Penfold R. A., Kemsley E. K.(2011) Tinylvr: a utility for viewing single predictor multivariate models in terms of a two factor latent vector model Chemometrics and Intelligent Laboratory Systems 105 19-26
  • Roe M. A., Collings R., Dainty J. R., Fairweather-Tait S. J.(2011) Low-pH cola beverages do not affect women’s iron absorption from a vegetarian meal Journal of Nutrition 141 805-808
  • Lo Curto A., Pitino I., Mandalari G., Dainty J., Faulks R. M., Wickham M.(2011) Survival of probiotic lactobacilli in the upper gastrointestinal tract using an in vitro gastric model of digestion. Food Microbiology View abstract on ScienceDirect
  • Wellner, N., Georget, D. M. R., Parker, M. L., and Morris, V. J. (2011) In situ Raman microscopy of starch granule structures in wild type and ae mutant maize kernels, Starch-Starke 63, 128-138.
  • Macierzanka, A., Rigby, N. M., Corfield, A. P., Wellner, N., Bottger, F., Mills, E. N. C., and Mackie, A. R. (2011) Adsorption of bile salts to particles allows penetration of intestinal mucus, Soft Matter 7, 8077-8084.
  • James S. A., Cadet G. M., Carvajal E. J. C., Barahona P. P., Cross K., Bond C. J., Roberts I. N.(2011) Saturnispora quitensis sp. nov., a yeast species isolated from the Maquipucuna cloud forest reserve in Ecuador International Journal of Systematic and Evolutionary Microbiology 61 3072-3076

Journal Papers – 2010

  • OPEN ACCESS Noor S. O., Ridgway K., Scovell L., Kemsley E. K., Lund E. K., Jamieson C., Johnson I. T., Narbad A. (2010) Ulcerative colitis and irritable bowel patients exhibit distinct abnormalities of the gut microbiota BMC Gastroenterology 10 134. doi 10.1186/1471-230X-10-134
  • Defernez M., Mandalari G., Mills E. N. C.(2010) A quantitative assessment of multi-laboratory reproducibility of SDS-PAGE assays: Digestion pattern of beta-casein and beta-lactoglobulin under simulated conditions Electrophoresis 31 2838-2848
  • Rowe G., Rawsthorne D., Scarpello T., Dainty J. R.(2010) Public engagement in research funding: A study of public capabilities and engagement methodology Public Understanding of Science 19 225-239
  • Tourlomousis P., Kemsley E. K., Ridgway K. P., Toscano M. J., Humprey T. J., Narbad A.(2010) PCR-denaturing gradient gel electrophoresis of complex microbial communities: a two-step approach to address the effect of gel-to-gel variation and allow valid comparisons across a large data set Microbial Ecology 59 776-786
  • Hurst R., Armah C. N., Dainty J. R., Hart D. J., Teucher B., Goldson A. J., Broadley M. R., Motley A. K., Fairweather-Tait S. J.(2010) Establishing optimal selenium status: results of a randomised, double-blind, placebo-controlled trial American Journal of Clinical Nutrition 91 923-931
  • Alston M., Seers J., Hinton J. C. D., Lucchini S.(2010) BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets BMC Bioinformatics 11 73
  • Belshaw N. J., Pal N., Tapp H. S., Dainty J. R., Lewis M. P. N., Williams M. R., Lund E. K., Johnson I. T.(2010) Patterns of DNA methylation in individual colonic crypts reveal aging and cancer-related field defects in the morphologically normal mucosa Carcinogenesis 31 1158-1163
  • Sarria B., Dainty J. R.(2010) Comparison of faecal monitoring and area under the curve techniques to determine iron absorption in humans using stable isotope labelling Journal of Trace Elements in Medicine and Biology 24 157-160
  • Paes, S. S., Yakimets, I., Wellner, N., Hill, S. E., Wilson, R. H., and Mitchell, J. R. (2010) Fracture mechanisms in biopolymer films using coupling of mechanical analysis and high speed visualization technique, European Polymer Journal 46, 2300-2309
  • Tydeman E. A., Parker M. L., Faulks R. M., Cross K. L., Fillery-Travis A., Gidley M. J., Rich G. T., Waldron K. W.(2010) Effect of carrot (Daucus carota) microstructure on carotene bioaccessibility in the upper gastrointestinal tract. 2. In vivo digestions Journal of Agricultural and Food Chemistry 58 9855-9860
  • Mandalari G., Tomaino A., Arcoraci T., Martorana M., Lo Turco V., Cacciola F., Rich G. T., Bisignano C., Saija A., Dugo P., Cross K., Parker M., Waldron K. W., Wickham M. S. J.(2010) Characterization of polyphenols, lipids and dietary fiber from almond skins(amygdalus communis L.) Journal of Food Composition and Analysis 23 166-174

Journal Papers – 2009

  • Bennett J. M. H., Rhodes M., Malcolm P. N., Dainty J. R., Simpson B. W., Johnson I. T., Boddy A. P., Wickham M. S. J., Williams S.(2009) Assessment of the relationship between post-meal satiety, gastric volume and gastric emptying after Swedish adjustable gastric banding. a pilot study using magnetic resonance imaging to assess postsurgery gastric function Obesity Surgery 19 757-763
  • Roe M. A., Dainty J. R., Collings R., Swinkels D. W., Fairweather-Tait S. J.(2009) Plasma hepcidin levels significantly predict inter-individual variation in iron absorption in healthy men American Journal of Clinical Nutrition 89 1088-1091
  • Mounet F., Moing A., Garcia V., Petit J., Maucourt M., Deborde C., Bernillon S., Le Gall G., Colquhoun I. J., Defernez M., Giraudel J. L., Rolin D., Rothan C., Lemaire-Chamley M.(2009) Gene and metabolite regulatory network analysis of early developing fruit tissues highlights new candidate genes for the control of tomato fruit composition and development Plant Physiology 149 1505-1528
  • Mandalari G., Adel-Patient K., Barkholt V., Baro C., Bennett L., Bublin M., Gaier S., Graser G., Ladics G. S., Mierzejewska D., Vassilopoulou E., Vissers Y. M., Zuidmeer L., Rigby N. M., Salt L., Defernez M., Mulholland F., Mackie A. R., Wickham M. S. J., Mills E. N. C.(2009) In vitro digestibility of beta-casein and beta-lactoglobulin under simulated human gastric and duodenal conditions: a multi-laboratory evaluation Regulatory Toxicology and Pharmacology 55 372-381
  • Pope G. A., MacKenzie D. A., Defernez M., Roberts I. N.(2009) Metabolic footprinting for the study of microbial biodiversity Cold Spring Harbor Protocols 4 Article: pdb.prot5222
  • Chambers K. F., Bacon J. R., Kemsley E. K., Mills R., Ball R., Mithen R. F., Traka M.(2009) Gene expression profile of primary prostate epithelial and stromal cells in response to sulforaphane or iberin exposure Prostate 69 1411-1421
  • Colquhoun I. J., Defernez M., Hill L., Kemsley E. K.(2009) Recent developments in techniques and applications of metabolic profiling Bioanalysis 1 1523-1526
  • Brett G. M., Hollands W., Needs P. W., Teucher B., Dainty J. R., Davis B. D., Brodbelt J. S., Kroon P. A.(2009) Absorption, metabolism and excretion of flavanones from single portions of orange fruit and juice and effects of anthropometric variables and contraceptive pill use on flavanone excretion British Journal of Nutrition 101 664-675
  • Van der Hee R. M., Miret S., Slattenaar M., Duchateau G. S. M., Rietveld A. G., Wilkinson J. E., Quail P. J., Berry M. J., Dainty J. R., Teucher B., Fairweather-Tait S. J.(2009) Calcium absorption from fortified ice cream formulations compared with calcium absorption from milk Journal of the American Dietetics Association 109 830-835
  • McLeod G., Clelland K., Tapp H. S., Kemsley E. K., Wilson R. H., Poulter G., Coombs D., Hewitt C. J.(2009) A comparison of variate pre-selection methods for use in partial least squares regression: a case study on NIR spectroscopy applied to monitoring beer fermentation. Journal of Food Engineering 90 300-307
  • Ioannides Y., Seers J., Defernez M., Raithatha C., Howarth M. S., Smith A. C., Kemsley E. K.(2009) Electromyography of the masticatory muscles can detect variation in the mechanical and sensory properties of apples Food Quality and Preference 20 203-215
  • Kemsley E. K., Tapp H. S.(2009) OPLS filtered data can be obtained directly from non-orthogonalized PLS1 Journal of Chemometrics 23 263-264
  • Hill M. H. E., Mushtaq S., Williams E. A., Dainty J. R., Powers H. J.(2009) Study protocol: Randomised controlled trial to investigate the functional significance of marginal riboflavin status in young women in the UK (Ribofem) BMC Public Health 9 Article 90
  • Tapp H. S., Kemsley E. K.(2009) Notes on the practical utility of OPLS Trends in Analytical Chemistry 28 1322-1327
  • Pot G. K., Majsak-Newman G., Geelen A., Harvey L. J., Nagengast F. M., Wittemen J. M., van de Meeberg P. C., Timmer R., Tan A., Wahab P. J., Hart A. R., Williams M. P., Przybylska-Phillips K., Dainty J. R., Schaafsma G., Kampman E., Lund E. K.(2009) Fish consumption and markers of colorectal cancer risk: a multicentre randomized controlled trial American Journal of Clinical Nutrition 90 354-361
  • Barratt, D. H. P., Derbyshire, P., Findlay, K., Pike, M., Wellner, N., Lunn, J., Feil, R., Simpson, C., Maule, A. J., and Smith, A. M. (2009) Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase, Proceedings of the National Academy of Sciences of the United States of America 106, 13124-13129
  • Furfaro M., Marigheto N., Moates G. K., Cross K., Parker M. L., Waldron K. W., Hills B.(2009) Multidimensional NMR cross-correlation relaxation study of carrot phloem and xylem. Part I. Peak assignment Applied Magnetic Resonance 35 521-535
  • Furfaro M., Marigheto N., Moates G. K., Cross K., Parker M. L., Waldron K. W., Hills B. P.(2009) Multidimensional NMR cross-correlation relaxation study of carrot. Part II Thermal and high-pressure processing Applied Magnetic Resonance 35 537-547
  • James S. A., Carvajal E. J. B., Bond C. J., Cross K., Nunez N. C., Portero P. B., Roberts I. N.(2009) Candida carvajalis sp. nov., an ascomycetous yeast from the Ecuadorian Amazon jungle FEMS Yeast Research 9 784-788

Journal Papers – 2008

  • Hollands W., Brett G. M., Dainty J. R., Teucher B., Kroon P. A.(2008) Urinary excretion of strawberry anthocyanins is dose-dependent for physiological oral doses of fresh fruit Molecular Nutrition and Food Research 52 1097-1105
  • Heaton S. J., Eady J. J., Parker M. L., Gotts K. L., Dainty J. R., Fairweather-Tait S. J., McArdle H. J., Srai K. S., Elliott R. M.(2008) The use of bewo cells as an in vitro model for placental iron transport American Journal of Physiology – Cell Physiology 295 C1445-53
  • Armah C. N. , Sharp P. , Mellon F. A. , Pariagh S. , Lund E. K. , Dainty J. R. , Teucher B. , Fairweather-Tait S. J. (2008) L-alpha-glycerophosphocholine contributes to meat’s enhancement of nonheme iron absorption Journal of Nutrition 138 873-877
  • Teucher B. , Dainty J. R. , Spinks C. A. , Majsak-Newman G. , Berry D. J. , Hoogewerff J. A. , Foxall R. J. , Jakobsen J. , Cashman K. D. , Flynn A. , Fairweather-Tait S. J. (2008) Sodium and bone health: the impact of moderately high and low salt intakes on calcium metabolism in postmenopausal women Journal of Bone Mineral Research 23 1477-1485
  • MacKenzie D. A. , Defernez M. , Dunn W. B. , Brown M. , Fuller L. J. , Seco de Herrera S. R. M. , Guenther A. , James S. A. , Eagles J. , Philo M. , Goodacre R. , Roberts I. N. (2008) Relatedness of medically important strains of Saccharomyces cerevisiae as revealed by phylogenetics and metabolomics Yeast 25 501-512
  • Sancho A. I., Gillabert M., Tapp H., Shewry P. R., Skeggs P. K., Mills E. N. C. (2008) The effect of environmental stress during grain filling on the soluble proteome of wheat (Triticum aestivum) endosperm Journal of Agriculture and Food Chemistry 56 5386-5393
  • Belshaw N. J., Elliott G. O., Foxall R. J., Dainty J. R., Pal N., Coupe A., Garg D., Bradburn D. M., Mathers J. C., Johnson I. T. (2008) Profiling cpg island field-methylation in both morphologically normal and neoplastic human colonic mucosa British Journal of Cancer 99 136-142
  • Tapp H. S., Kemsley E. K. (2008) Optimizing the efficiency of cross-validation in linear discriminant analysis through selective use of the Sherman-Morrison-Woodbury inversion formula Journal of Chemometrics 22 419-421
  • Rigby, N. M., Marsh, J., Sancho, A. I., Wellner, K., Akkerdaas, J., van Ree, R., Knulst, A., Fernandez-Rivas, M., Brettlova, V., Schilte, P. P., Summer, C., Pumphrey, R., Shewry, P. R., and Mills, E. N. C. (2008) The purification and characterisation of allergenic hazelnut seed proteins, Mol. Nutr. Food Res. 52, S251-S261
  • Oberhuber, C., Ma, Y., Marsh, J., Rigby, N., Smole, U., Radauer, C., Alessandri, S., Briza, P., Zuidmeer, L., Maderegger, B., Himly, M., Sancho, A. I., van Ree, R., Knulst, A., Ebner, C., Shewry, P., Mills, E. N. C., Wellner, K., Breiteneder, H., Hoffmann-Sommergruber, K., and Bublin, M. (2008) Purification and characterisation of relevant natural and recombinant apple allergens, Mol. Nutr. Food Res. 52, S208-S219.
  • Marsh, J., Rigby, N., Wellner, K., Reese, G., Knulst, A., Akkerdaas, J., van Ree, R., Radauer, C., Lovegrove, A., Sancho, A., Mills, C., Vieths, S., Hoffmann-Sommergruber, K., and Shewry, P. R. (2008) Purification and characterisation of a panel of peanut allergens suitable for use in allergy diagnosis, Mol. Nutr. Food Res. 52, S272-S285.
  • Reis, K. C., Pereira, J., Smith, A. C., Carvalho, C. W. P., Wellner, N., and Yakimets, I. (2008) Characterization of polyhydroxybutyrate-hydroxyvalerate (PHB-HV)/maize starch blend films, J. Food Eng. 89, 361-369
  • Heaton S. J., Eady J. J., Parker M. L., Gotts K. L., Dainty J. R., Fairweather-Tait S. J., McArdle H. J., Srai K. S., Elliott R. M.(2008) The use of bewo cells as an in vitro model for placental iron transport American Journal of Physiology – Cell Physiology 295 C1445-53

Journal Papers – 2007

  • Wright A. J. A. , Dainty J. R. , Finglas P. M. (2007) Folic acid metabolism in humans revisited: potential implications for proposed mandatory folic acid fortification in the UK British Journal of Nutrition 98 667-675
  • Teucher B. , Skinner J. , Skidmore P. M. L. , Cassidy A. , Fairweather-Tait S. J. , Hooper L. , Roe M. A. , Foxall R. J. , Oyston S. L. , Cherkas L. F. , Perks U. C. , Spector T. D. , MacGregor A. J. (2007) Dietary patterns and heritability of food choice in a UK female twin cohort Twin Research 10 734-748
  • Chen Y-M., Teucher B., Tan X-Y., Dainty J. R., Lee K. K. C., Woo J. L. F., Ho S. C. (2007) Calcium absorption in postmenopausal Chinese women: a randomized crossover intervention study British Journal of Nutrition 97 160-166
  • McCann M. C. , Defernez M. , Urbanowicz B. R. , Tewari J. , Langewisch T. , Olek A. , Wells B. , Wilson R. , Carpita N. C. (2007) Neural network analyses of infrared spectra for classifying cell wall architectures Plant Physiology 143 1314-1326
  • Harvey L. J. , Dainty J. R. , Hollands W. J. , Bull V. J. , Hoogewerff J. A. , Foxall R. J. , Fairweather-Tait S. J. (2007) Effect of high dose iron supplements on fractional zinc absorption and status in pregnant women American Journal of Clinical Nutrition 85 131-136
  • Roe M. A. , Spinks C. , Heath A. L. M. , Harvey L. J. , Foxall R. , Wimperis J. , Wolf C. , Fairweather-Tait S. J. (2007) Serum prohepcidin concentration: no association with iron absorption in healthy men; and no relationship with iron status in men carrying HFE mutations, hereditary hemochromatosis patients undergoing phlebotomy treatment, or pregnant women British Journal of Nutrition 97 544-549
  • Venelinov T. I. , Beattie J. H. , Dainty J. R. , Hollands W. J. , Fairweather-Tait S. J. , Harvey L. J. (2007) Stable isotope pilot study of exchangeable copper kinetics in human blood plasma Journal of Trace Elements in Medicine and Biology 21 138-140
  • Pope G. A. , MacKenzie D. A. , Defernez M. , Aroso M. A. M. , Fuller L. J. , Mellon F. , Dunn W. , Brown M. , Goodacre R. , Kell D. B. , Marvin M., Louis E. J., Roberts I. N. (2007) Metabolic footprinting as a tool for discriminating between brewing yeasts Yeast 24 667-679
  • Dainty J. R. , Bullock N. R. , Hart D. J. , Hewson A. T. , Turner R. , Finglas P. M. , Powers H. J. (2007) Quantification of the bioavailability of riboflavin from foods using stable isotope labels and kinetic modelling American Journal of Clinical Nutrition 85 1557-1564
  • Kemsley E. K. , Le Gall G. , Watson A. D. , Harvey L. J. , Tapp H., Dainty J. R., Colquhoun I. J. (2007) Multivariate techniques and their application in nutrition: a metabolomics case study British Journal of Nutrition 98 Jan 14
  • Ioannides Y., Raithatha C. A., Howarth M. S., Defernez M., Kemsley E. K., Smith A. C. (2007) Texture analysis of red delicious apples: towards multiple measurements on individual fruit Food Quality and Preference 18 825-833
  • Defernez M. , Foxall R. J. , O’Malley C. J. , Montague G. , Ring S. M. , Kemsley E. K. (2007) Modelling beer fermentation variability Journal of Food Engineering 83 167-172
  • Kemsley E. K. , Tapp H. S. , Binns R. , Mackin R. O. , Peyton A. J. (2007) Feasibility study of NIR diffuse optical tomography on agricultural produce Postharvest Biology and Technology 48 223-230
  • Yakimets, I., Wellner, N., Smith, A. C., Wilson, R. H., Farhat, I., and Mitchell, J. (2007) Effect of water content on the fracture behaviour of hydroxypropyl cellulose films studied by the essential work of fracture method, Mechanics of Materials 39, 500-512.
  • Yakimets, I., Paes, S. S., Wellner, N., Smith, A. C., Wilson, R. H., and Mitchell, J. R. (2007) Effect of water content on the structural reorganization and elastic properties of biopolymer films: A comparative study, Biomacromolecules 8, 1710-1722.
  • Toole, G. A., Wilson, R. H., Parker, M. L., Wellner, N. K., Wheeler, T. R., Shewry, P. R., and Mills, E. N. C. (2007) The effect of environment on endosperm cell-wall development in Triticum aestivum during grain filling: an infrared spectroscopic imaging study, Planta 225, 1393-1403
  • Noel, T. R., Krzeminski, A., Moffat, J., Parker, R., Wellner, N., and Ring, S. G. (2007) The deposition and stability of pectin/protein and pectin/poly-L-lysine/protein multilayers, Carbohydrate Polymers 70, 393-405.
  • Moffat, J., Noel, T. R., Parker, R., Wellner, N., and Ring, S. G. (2007) The environmental response and stability of pectin and poly-L-lysine multilayers, Carbohydrate Polymers 70, 422-429.

Journal Papers – 2006

  • Witthoft C. W., Dainty J. R., Arkbage K., Johansson M., Lundin E., Berglund G., Zhang J. X., Lennernas H. (2006) Folate absorption from folate fortified and processed foods using a human ileostomymodel British Journal of Nutrition 95 181-187
  • Piggott R. B., Beckert M., Foxall R., Smith A. C. (2006) The use of image analysis in observing mechanically deforming notched and un-notched onion epidermal cellular structures Journal of the Science of Food and Agriculture 86 623-633
  • Olias R., Maldonado B., Radreau P., Le Gall G., Mulholland F., Colquhoun I. J., Kemsley E. K. (2006) Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of proteins in dry-cured hams: data registration and multivariate analysis across multiple gels Electrophoresis 27 (7) 1288-1299
  • Teucher B. , Majsak-Newman G. , Dainty J. R. , McDonagh D. , FitzGerald R. J. , Fairweather-Tait S. J. (2006) Calcium absorption is not increased by caseinophosphopeptides American Journal of Clinical Nutrition 84 162-166
  • Sancho A. I. , Foxall R. , Rigby N. M. , Browne T. , Waldron K. W. , Mills E. N. C. (2006) Maturity and storage influence on the apple (Malus domestica) allergen MAL D3, a non-specific lipid transfer protein Journal of Agricultural and Food Chemistry 54 5098-5104
  • Sancho A. I. , Foxall R. , Browne T. , Dey R. , Zuidmeer L. , Waldron K. W. , van Ree R. , Hoffmann K. , Laimer M. , Mills E. N. C. (2006) Effect of postharvest storage on the expression of the apple allergen MAL D 1 Journal of Agricultural and Food Chemistry 54 5917-5923
  • Wellner, N., Marsh, J. T., Savage, A. W. J., Halford, N. G., Shewry, P. R., Mills, E. N. C., and Belton, P. S. (2006) Comparison of repetitive sequences derived from high molecular weight subunits of wheat glutenin, an elastomeric plant protein, Biomacromolecules 7, 1096-1103.
  • Salt, L. J., Wilde, P. J., Georget, D., Wellner, N., Skeggs, P. K., and Mills, E. N. C. (2006) Composition and surface properties of dough liquor, Journal of Cereal Science 43, 284-292
  • Laos, K., Parker, R., Moffat, J., Wellner, N., and Ring, S. G. (2006) The adsorption of globular proteins, bovine serum albumin and beta-lactoglobulin, on poly-L-lysine-furcellaran multilayers, Carbohydrate Polymers 65, 235-242
  • Krzeminski, A., Marudova, M., Moffat, J., Noel, T. R., Parker, R., Wellner, N., and Ring, S. G. (2006) Deposition of pectin/poly-L-lysine multilayers with pectins of varying degrees of esterification, Biomacromolecules 7, 498-506
  • Gao, C. L., Stading, M., Wellner, N., Parker, M. L., Noel, T. R., Mills, E. N. C., and Belton, P. S. (2006) Plasticization of a protein-based film by glycerol: A spectroscopic, mechanical, and thermal study, J. Agric. Food Chem. 54, 4611-4616.
  • Byaruhanga, Y. B., Emmambux, M. N., Belton, P. S., Wellner, N., Ng, K. G., and Taylor, J. R. N. (2006) Alteration of kafirin and kafirin film structure by heating with microwave energy and tannin complexation, J. Agric. Food Chem. 54, 4198-4207

Journal Papers – 2005

  • Harvey L. J., Dainty J. R., Hollands W. J., Bull V. J., Beattie J. H., Venilov T. I., Hoogewerff J. A., Davies I. M., Fairweather-Tait S. J. (2005) Use of mathematical modeling to study copper metabolism in humans American Journal of Clinical Nutrition 81 807-813
  • Roe M. A., Heath A. M., Oyston S. L., Macrow C., Hoogewerff J. A., Foxall R. J., Dainty J. R., Majsak-Newman G., Willis G., Fairweather-Tait S. J. (2005) Iron absorption in male C282Y heterozygotes American Journal of Clinical Nutrition 81 814-821
  • Harvey L. J., Armah C., Dainty J. R., Foxall R. J., Lewis D. J., Langford N. J., Fairweather-Tait S. J. (2005) Impact of menstrual blood loss and diet on iron deficiency among women in the UK British Journal of Nutrition 94 557-564
  • Eady J. J., Wortley G.M., Wormstone Y. M., Hughes J. C., Astley S. B., Foxall R. J., Doleman J. F., Elliott R.M. (2005) Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers Physiological Genomics 22 402-411
  • Yakimets, I., Wellner, N., Smith, A. C., Wilson, R. H., Farhat, I., and Mitchell, J. (2005) Mechanical properties with respect to water content of gelatin films in glassy state, Polymer 46, 12577-12585
  • Wellner, N., Mills, E. N. C., Brownsey, G., Wilson, R. H., Brown, N., Freeman, J., Halford, N. G., Shewry, P. R., and Belton, P. S. (2005) Changes in protein secondary structure during gluten deformation studied by dynamic Fourier transform infrared spectroscopy, Biomacromolecules 6, 255-261.
  • Moreno, F. J., Maldonado, B. M., Wellner, N., and Mills, E. N. C. (2005) Thermostability and in vitro digestibility of a purified major allergen 2S albumin (Ses i 1) from white sesame seeds (Sesamum indicum L.), Biochimica et Biophysica Acta-Proteins and Proteomics 1752, 142-153.
  • Gao, C. L., Taylor, J., Wellner, N., Byaruhanga, Y. B., Parker, M. L., Mills, E. N. C., and Belton, P. S. (2005) Effect of preparation conditions on protein secondary structure and biofilm formation of kafirin, J. Agric. Food Chem. 53, 306-312.
  • Mills, E. N. C., Parker, M. L., Wellner, N., Toole, G., Feeney, K., and Shewry, P. R. (2005) Chemical imaging: the distribution of ions and molecules in developing and mature wheat grain, Journal of Cereal Science 41, 193-201